Sequence Similarity Clusters for the Entities in PDB 5LCW

Entity #1 | Chains: A
Anaphase-promoting complex subunit 1 protein, length: 1944 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69571
95 % 1 8 9864
90 % 1 8 9789
70 % 1 8 9936
50 % 1 8 9224
40 % 1 8 8790
30 % 1 8 8174
Entity #10 | Chains: L
Anaphase-promoting complex subunit 10 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 8889
95 % 2 10 8497
90 % 2 10 8447
70 % 2 10 8256
50 % 2 10 7737
40 % 2 10 7451
30 % 2 10 6968
Entity #11 | Chains: M
Anaphase-promoting complex subunit 13 protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 9 9151
95 % 1 9 9668
90 % 1 9 9595
70 % 1 9 9215
50 % 1 9 8622
40 % 1 9 8062
30 % 1 9 7724
Entity #12 | Chains: N
Anaphase-promoting complex subunit 2 protein, length: 822 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 18701
95 % 1 8 11204
90 % 1 8 11088
70 % 1 8 10604
50 % 1 8 9777
40 % 1 8 9256
30 % 1 8 8587
Entity #13 | Chains: O
Anaphase-promoting complex subunit 5 protein, length: 755 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 18197
95 % 1 9 9669
90 % 1 9 9596
70 % 1 9 8843
50 % 1 9 8251
40 % 1 9 7920
30 % 1 9 7407
Entity #14 | Chains: Q
Cell division cycle protein 20 homolog protein, length: 374 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 78691
95 % 1 1 55588
90 % 1 1 52487
70 % 1 1 45797
50 % 1 1 39545
40 % 1 1 35774
30 % 1 1 31477
Entity #15 | Chains: R
Cell division cycle protein 20 homolog protein, length: 499 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 14746
95 % 2 5 14292
90 % 2 5 14099
70 % 2 5 13311
50 % 2 5 12118
40 % 2 5 11325
30 % 2 5 10401
Entity #16 | Chains: S
Mitotic checkpoint serine/threonine-protein kinase BUB1 beta,Mitotic checkpoint serine/threonine-protein kinase BUB1 beta protein, length: 342 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 78693
95 % 1 1 55589
90 % 1 1 52488
70 % 1 1 45798
50 % 1 1 39546
40 % 1 1 35776
30 % 1 1 31478
Entity #17 | Chains: X,Y
Anaphase-promoting complex subunit 7 protein, length: 599 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 6504
95 % 1 9 4339
90 % 1 9 4414
70 % 1 9 4382
50 % 1 9 4281
40 % 1 9 4189
30 % 1 9 4101
Entity #18 | Chains: Z
Mitotic spindle assembly checkpoint protein MAD2A protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 12408
95 % 7 11 1680
90 % 8 11 1606
70 % 8 12 1631
50 % 8 12 1619
40 % 8 12 1678
30 % 8 12 1705
Entity #2 | Chains: B
Anaphase-promoting complex subunit 11 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 12147
95 % 1 9 9209
90 % 1 9 8921
70 % 1 9 8891
50 % 1 9 8109
40 % 1 9 7958
30 % 3 11 6227
Entity #3 | Chains: C,P
Cell division cycle protein 23 homolog protein, length: 597 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 5560
95 % 1 9 4319
90 % 1 9 4396
70 % 1 9 4360
50 % 1 9 4262
40 % 1 9 4169
30 % 1 9 4086
Entity #4 | Chains: D
Anaphase-promoting complex subunit 15 protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 18675
95 % 1 7 12622
90 % 1 7 12449
70 % 1 7 11839
50 % 1 7 10846
40 % 1 7 10207
30 % 1 7 9441
Entity #5 | Chains: E
Anaphase-promoting complex subunit 16 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 9 8549
95 % 1 9 9099
90 % 1 9 9314
70 % 1 9 8787
50 % 1 9 8433
40 % 1 9 8105
30 % 1 9 7575
Entity #6 | Chains: F,H
Cell division cycle protein 27 homolog protein, length: 824 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 6577
95 % 1 9 4213
90 % 1 9 4294
70 % 1 9 4269
50 % 1 9 4202
40 % 1 9 4116
30 % 1 9 3994
Entity #7 | Chains: G,W
Anaphase-promoting complex subunit CDC26 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 8 4425
95 % 1 10 4144
90 % 1 10 4426
70 % 1 10 4399
50 % 1 10 4290
40 % 1 10 4119
30 % 1 10 4033
Entity #8 | Chains: I
Anaphase-promoting complex subunit 4 protein, length: 808 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 7 12513
95 % 2 10 8501
90 % 2 10 8451
70 % 2 10 8240
50 % 2 10 7724
40 % 2 10 7441
30 % 2 10 6956
Entity #9 | Chains: J,K
Cell division cycle protein 16 homolog protein, length: 620 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 6177
95 % 1 11 4405
90 % 1 11 4482
70 % 1 11 4439
50 % 1 11 4329
40 % 1 11 4229
30 % 1 11 4130

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures