Sequence Similarity Clusters for the Entities in PDB 5LAJ

Entity #1 | Chains: A,O
Proteasome subunit alpha type-2 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 168 309 9
95 % 168 309 20 Flexibility: No
Max RMSD: 3.5, Avg RMSD: 0.3
PDBFlex
90 % 168 309 23
70 % 168 309 33
50 % 168 309 70
40 % 179 366 42
30 % 1080 2273 2
Entity #10 | Chains: J,X
Proteasome subunit beta type-4 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 168 305 18
95 % 168 305 30 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 168 305 32
70 % 168 305 41
50 % 168 305 75
40 % 179 360 49
30 % 179 362 50
Entity #11 | Chains: K,Y
Proteasome subunit beta type-5 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 93 182 76
95 % 134 247 61 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 134 247 68
70 % 176 312 28
50 % 176 316 63
40 % 176 316 81
30 % 179 339 30
Entity #12 | Chains: L,Z
Proteasome subunit beta type-6 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 138 273 21
95 % 168 306 29 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 168 306 30
70 % 168 306 40
50 % 168 306 74
40 % 168 328 79
30 % 168 328 86
Entity #13 | Chains: M,a
Proteasome subunit beta type-7 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 168 306 16
95 % 168 306 28 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 168 306 31
70 % 168 306 39
50 % 168 306 73
40 % 168 306 90
30 % 168 306 91
Entity #14 | Chains: N,b
Proteasome subunit beta type-1 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 168 306 15
95 % 168 306 26 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 168 306 28
70 % 168 306 37
50 % 168 306 72
40 % 168 310 87
30 % 168 310 89
Entity #2 | Chains: B,P
Proteasome subunit alpha type-3 protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 168 309 11
95 % 168 309 21 Flexibility: No
Max RMSD: 2.6, Avg RMSD: 0.3
PDBFlex
90 % 168 309 24
70 % 168 309 34
50 % 179 364 36
40 % 179 366 43
30 % 1081 2273 2
Entity #3 | Chains: C,Q
Proteasome subunit alpha type-4 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 168 309 10
95 % 168 309 22 Flexibility: No
Max RMSD: 2.8, Avg RMSD: 0.3
PDBFlex
90 % 168 309 25
70 % 168 309 35
50 % 179 363 38
40 % 182 393 18
30 % 1082 2273 2
Entity #4 | Chains: D,R
Proteasome subunit alpha type-5 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 167 308 13
95 % 168 309 24 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.2
PDBFlex
90 % 168 310 21
70 % 168 310 31
50 % 179 365 35
40 % 179 365 45
30 % 1083 2273 2
Entity #5 | Chains: E,S
Proteasome subunit alpha type-6 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 168 307 17
95 % 168 309 19 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.2
PDBFlex
90 % 168 309 22
70 % 168 309 32
50 % 168 309 69
40 % 168 309 88
30 % 1084 2273 2
Entity #6 | Chains: F,T
Probable proteasome subunit alpha type-7 protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 160 264 25
95 % 160 264 44 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 160 264 49
70 % 160 264 59
50 % 160 264 93
40 % 160 264 107
30 % 160 264 111
Entity #7 | Chains: G,U
Proteasome subunit alpha type-1 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 168 309 12
95 % 168 309 23 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.2
PDBFlex
90 % 168 309 26
70 % 168 309 36
50 % 179 361 41
40 % 179 367 44
30 % 1085 2273 2
Entity #8 | Chains: H,V
Proteasome subunit beta type-2 protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 145 240 42
95 % 160 285 37 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.3
PDBFlex
90 % 165 296 38
70 % 165 296 46
50 % 179 339 53
40 % 179 339 69
30 % 179 339 72
Entity #9 | Chains: I,W
Proteasome subunit beta type-3 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 168 306 14
95 % 168 306 27 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 168 306 29
70 % 168 306 38
50 % 179 357 42
40 % 179 363 46
30 % 179 363 48

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures