Sequence Similarity Clusters for the Entities in PDB 5L8L

Entity #1 | Chains: A
Aurora kinase A protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 37 1354
95 % 1 155 240 Flexibility: Low
Max RMSD: 9.3, Avg RMSD: 2.0
PDBFlex
90 % 1 163 239
70 % 4 177 238
50 % 4 178 246
40 % 4 178 264
30 % 94 916 16
Entity #2 | Chains: B
New antigen receptor variable domain protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 48313
95 % 1 3 25840 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.6
PDBFlex
90 % 1 3 25004
70 % 1 4 20445
50 % 3 17 2419
40 % 3 17 2421
30 % 4 19 2140

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures