Sequence Similarity Clusters for the Entities in PDB 5L6C

Entity #1 | Chains: A,O
Proteasome subunit alpha type-2 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 309 9
95 % 45 309 19 Flexibility: No
Max RMSD: 3.5, Avg RMSD: 0.3
PDBFlex
90 % 45 309 22
70 % 45 309 31
50 % 45 309 68
40 % 55 366 43
30 % 330 2273 2
Entity #10 | Chains: J,X
Proteasome subunit beta type-4 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 305 18
95 % 45 305 30 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 45 305 32
70 % 45 305 40
50 % 45 305 73
40 % 55 360 48
30 % 55 362 49
Entity #11 | Chains: K,Y
Proteasome subunit beta type-8,Proteasome subunit beta type-5 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 4293
95 % 6 26 1263 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 6 26 1306
70 % 55 312 27
50 % 55 316 62
40 % 55 316 81
30 % 58 339 31
Entity #12 | Chains: L,Z
Proteasome subunit beta type-6,Proteasome subunit beta type-1,Proteasome subunit beta type-6,Proteasome subunit beta type-1,Proteasome subunit beta type-6 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 33 694
95 % 45 306 29 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 45 306 31
70 % 45 306 39
50 % 45 306 72
40 % 45 328 80
30 % 45 328 85
Entity #13 | Chains: M,a
Proteasome subunit beta type-7 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 306 15
95 % 45 306 26 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 45 306 28
70 % 45 306 36
50 % 45 306 71
40 % 45 306 90
30 % 45 306 90
Entity #14 | Chains: N,b
Proteasome subunit beta type-1 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 306 14
95 % 45 306 27 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 45 306 29
70 % 45 306 37
50 % 45 306 70
40 % 45 310 87
30 % 45 310 89
Entity #2 | Chains: B,P
Proteasome subunit alpha type-3 protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 309 11
95 % 45 309 22 Flexibility: No
Max RMSD: 2.6, Avg RMSD: 0.3
PDBFlex
90 % 45 309 25
70 % 45 309 35
50 % 55 364 37
40 % 55 366 44
30 % 331 2273 2
Entity #3 | Chains: C,Q
Proteasome subunit alpha type-4 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 309 12
95 % 45 309 24 Flexibility: No
Max RMSD: 2.8, Avg RMSD: 0.3
PDBFlex
90 % 45 309 26
70 % 45 309 32
50 % 55 363 38
40 % 58 393 17
30 % 332 2273 2
Entity #4 | Chains: D,R
Proteasome subunit alpha type-5 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 308 13
95 % 45 309 23 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.2
PDBFlex
90 % 45 310 21
70 % 45 310 30
50 % 55 365 36
40 % 55 365 46
30 % 333 2273 2
Entity #5 | Chains: E,S
Proteasome subunit alpha type-6 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 307 17
95 % 45 309 20 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.2
PDBFlex
90 % 45 309 23
70 % 45 309 33
50 % 45 309 69
40 % 45 309 89
30 % 334 2273 2
Entity #6 | Chains: F,T
Probable proteasome subunit alpha type-7 protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 43 264 25
95 % 43 264 43 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 43 264 48
70 % 43 264 60
50 % 43 264 93
40 % 43 264 108
30 % 43 264 110
Entity #7 | Chains: G,U
Proteasome subunit alpha type-1 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 309 10
95 % 45 309 21 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.2
PDBFlex
90 % 45 309 24
70 % 45 309 34
50 % 55 361 42
40 % 55 367 45
30 % 335 2273 2
Entity #8 | Chains: H,V
Proteasome subunit beta type-2 protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 240 41
95 % 44 285 34 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.3
PDBFlex
90 % 45 296 35
70 % 45 296 44
50 % 55 339 53
40 % 55 339 71
30 % 55 339 72
Entity #9 | Chains: I,W
Proteasome subunit beta type-3 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 306 16
95 % 45 306 28 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 45 306 30
70 % 45 306 38
50 % 55 357 43
40 % 55 363 47
30 % 55 363 48

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures