Sequence Similarity Clusters for the Entities in PDB 5KYW

Entity #1 | Chains: A
Protein transport protein Sec23A protein, length: 765 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 19 3112
95 % 17 22 3298 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 17 22 3432
70 % 17 22 3446
50 % 17 22 3396
40 % 20 27 2457
30 % 20 27 2437
Entity #2 | Chains: B
Protein transport protein Sec24D protein, length: 770 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 13993
95 % 4 6 14596 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 4 6 14352
70 % 4 6 13559
50 % 5 7 8484
40 % 5 7 8154
30 % 21 27 2623
Entity #3 | Chains: C
TANGO1 peptide3 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures