Sequence Similarity Clusters for the Entities in PDB 5K9J

Entity #1 | Chains: H
56.a.09 heavy chain protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 35118
95 % 1 2 29147 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 1 2 28067
70 % 496 2903 1
50 % 523 3048 1
40 % 523 3048 1
30 % 1034 6095 1
Entity #2 | Chains: L
56.a.09 light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 35116
95 % 21 105 235 Flexibility: Low
Max RMSD: 6.2, Avg RMSD: 1.8
PDBFlex
90 % 40 235 78
70 % 402 2368 2
50 % 504 3003 2
40 % 504 3003 2
30 % 1035 6095 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures