Sequence Similarity Clusters for the Entities in PDB 5JW5

Entity #1 | Chains: A,H
MEDI8852 Heavy chain protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57153
95 % 1 4 9760 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.2
PDBFlex
90 % 1 7 6304
70 % 436 2922 1
50 % 464 3059 1
40 % 465 3072 1
30 % 915 6138 1
Entity #2 | Chains: B,L
MEDI8852 Light chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 8895
95 % 1 4 9385 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.2
PDBFlex
90 % 82 535 4
70 % 354 2383 2
50 % 444 3022 2
40 % 444 3022 2
30 % 916 6138 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures