Sequence Similarity Clusters for the Entities in PDB 5JVD

Entity #1 | Chains: A,C
Tubulin alpha-1B chain protein, length: 451 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 149 40
95 % 46 239 13 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.0
PDBFlex
90 % 46 240 15
70 % 46 250 21
50 % 46 250 43
40 % 91 500 8
30 % 91 508 12
Entity #2 | Chains: B,D
Tubulin beta-2B chain protein, length: 445 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 40 97 181
95 % 46 236 15 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 0.7
PDBFlex
90 % 46 243 13
70 % 46 250 20
50 % 46 250 42
40 % 92 500 8
30 % 92 508 12
Entity #3 | Chains: E
Stathmin-4 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 94 404
95 % 38 108 436 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.9
PDBFlex
90 % 38 108 467
70 % 38 108 509
50 % 38 108 539
40 % 38 108 579
30 % 38 108 604
Entity #4 | Chains: F
Tubulin beta-2B chain protein, length: 384 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 92 411
95 % 36 92 552 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 0.8
PDBFlex
90 % 36 92 571
70 % 36 95 584
50 % 36 95 619
40 % 36 95 653
30 % 36 95 690

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures