Sequence Similarity Clusters for the Entities in PDB 5JP3

Entity #1 | Chains: A,C,E,G
Xanthomonas outer protein D protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 17720
95 % 2 2 16650 Flexibility: Low
Max RMSD: 4.3, Avg RMSD: 1.8
PDBFlex
90 % 2 2 17164
70 % 2 2 15302
50 % 2 2 13827
40 % 2 2 12864
30 % 2 2 11739
Entity #2 | Chains: B,D,F,H
Polyubiquitin-B protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 263 387 4
95 % 330 485 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 338 498 6
70 % 379 548 9
50 % 383 563 11
40 % 383 567 14
30 % 393 583 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures