Sequence Similarity Clusters for the Entities in PDB 5JH5

Entity #1 | Chains: A
Lysine-specific demethylase 2B protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66644
95 % 1 1 48227
90 % 1 1 45746
70 % 1 1 40231
50 % 1 1 34859
40 % 1 1 31494
30 % 1 1 27844
Entity #2 | Chains: B
S-phase kinase-associated protein 1 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 12 3663
95 % 2 12 4290 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.7
PDBFlex
90 % 2 12 4356
70 % 9 27 1566
50 % 9 27 1593
40 % 9 27 1639
30 % 9 27 1663
Entity #3 | Chains: C
Polycomb group RING finger protein 1 protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66643
95 % 1 1 48226
90 % 1 1 45745
70 % 1 1 40230
50 % 1 1 34858
40 % 1 1 31493
30 % 1 1 27843
Entity #4 | Chains: D
BCL-6 corepressor-like protein 1 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 31972
95 % 2 2 26797 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.0
PDBFlex
90 % 2 2 24951
70 % 2 2 23610
50 % 3 4 13428
40 % 3 4 12519
30 % 3 4 11405

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures