Sequence Similarity Clusters for the Entities in PDB 5JG6

Entity #1 | Chains: A,D
Anaphase-promoting complex subunit 11 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 13470
95 % 2 3 13284 Flexibility: Medium
Max RMSD: 10.4, Avg RMSD: 5.8
PDBFlex
90 % 2 3 13108
70 % 2 3 12432
50 % 2 3 11383
40 % 2 3 10707
30 % 2 3 9882
Entity #2 | Chains: B,C
Polyubiquitin-B protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58514
95 % 1 1 43297 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 41235
70 % 151 544 9
50 % 155 564 11
40 % 155 568 14
30 % 160 588 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures