Sequence Similarity Clusters for the Entities in PDB 5JEN

Entity #1 | Chains: A,C
Anti-sigma-V factor RsiV protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41753
95 % 1 1 33234 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 31863
70 % 1 1 28571
50 % 1 1 25048
40 % 1 1 22853
30 % 1 1 20351
Entity #2 | Chains: B,D
Lysozyme C protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 661 767 3
95 % 712 820 5 Flexibility: No
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 724 837 5
70 % 730 844 11
50 % 943 1070 9
40 % 946 1076 10
30 % 966 1105 15

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures