Sequence Similarity Clusters for the Entities in PDB 5IYA

Entity #1 | Chains: A
DNA-directed RNA polymerase II subunit RPB1 protein, length: 1970 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 8990
95 % 11 15 5547
90 % 11 15 5588
70 % 11 15 5527
50 % 11 15 5317
40 % 11 15 5278
30 % 11 15 4952
Entity #10 | Chains: J
DNA-directed RNA polymerase II subunit RPB10 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 15 4682
95 % 11 15 5628
90 % 11 15 5686
70 % 203 220 228
50 % 203 220 242
40 % 203 220 254
30 % 203 220 274
Entity #11 | Chains: K
DNA-directed RNA polymerase II subunit RPB11-a protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 15 4689
95 % 11 15 5653
90 % 11 15 5704
70 % 11 15 5631
50 % 11 15 5429
40 % 11 15 5286
30 % 11 15 5047
Entity #12 | Chains: L
DNA-directed RNA polymerase II subunit RPB12 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 15 4547
95 % 11 15 5416
90 % 11 15 5428
70 % 11 15 5365
50 % 11 15 5173
40 % 11 15 5034
30 % 11 15 4829
Entity #13 | Chains: M
Transcription initiation factor IIB protein, length: 316 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 9207
95 % 6 9 9432
90 % 6 9 9331
70 % 6 9 9073
50 % 6 9 8443
40 % 6 9 8103
30 % 6 9 7559
Entity #14 | Chains: N
Transcription initiation factor IIA subunit 1 protein, length: 376 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 8717
95 % 6 9 9369
90 % 6 9 9277
70 % 6 9 9016
50 % 6 9 8333
40 % 6 9 8006
30 % 6 9 7479
Entity #15 | Chains: O
Transcription initiation factor IIA subunit 2 protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 8385
95 % 7 10 8711
90 % 7 10 8545
70 % 7 10 8647
50 % 7 10 7843
40 % 7 10 7554
30 % 7 10 7247
Entity #16 | Chains: P
TATA-box-binding protein protein, length: 339 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 13 5429
95 % 9 13 6245
90 % 9 13 6258
70 % 9 13 6176
50 % 9 13 5896
40 % 9 13 5739
30 % 9 13 5470
Entity #17 | Chains: Q
General transcription factor IIE subunit 1 protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 9321
95 % 6 9 9863
90 % 6 9 9763
70 % 6 9 9462
50 % 6 9 8816
40 % 6 9 8447
30 % 6 9 7739
Entity #18 | Chains: R
Transcription initiation factor IIE subunit beta protein, length: 291 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 9478
95 % 6 9 9951
90 % 6 9 9856
70 % 6 9 9539
50 % 6 9 8903
40 % 6 9 8522
30 % 6 9 7942
Entity #19 | Chains: S
General transcription factor IIF subunit 1 protein, length: 517 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 9320
95 % 6 9 9655
90 % 6 9 9560
70 % 6 9 9277
50 % 6 9 8633
40 % 6 9 8280
30 % 6 9 7738
Entity #2 | Chains: B
DNA-directed RNA polymerase II subunit RPB2 protein, length: 1174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 7574
95 % 11 15 5681
90 % 11 15 5725
70 % 11 15 5657
50 % 156 170 368
40 % 164 178 357
30 % 176 193 350
Entity #20 | Chains: T
General transcription factor IIF subunit 2 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 9023
95 % 6 9 9854
90 % 6 9 9756
70 % 6 9 9516
50 % 6 9 8812
40 % 6 9 8442
30 % 6 9 7872
Entity #21 | Chains: U
Transcription elongation factor A protein 1 protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 7 12692
95 % 5 7 12809
90 % 5 7 12550
70 % 5 7 11971
50 % 5 7 10964
40 % 5 7 10253
30 % 5 8 8536
Entity #22 | Chains: X
SCP-X dna, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
SCP-Y dna, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
DNA-directed RNA polymerase II subunit RPB3 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 8428
95 % 11 15 5437
90 % 11 15 5596
70 % 11 15 5534
50 % 11 15 5335
40 % 13 20 3809
30 % 13 20 3729
Entity #4 | Chains: D
DNA-directed RNA polymerase II subunit RPB4 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 14 3991
95 % 12 16 4193
90 % 12 16 4244
70 % 12 16 4232
50 % 12 16 4138
40 % 14 18 3440
30 % 14 18 3364
Entity #5 | Chains: E
DNA-directed RNA polymerase II subunit RPB5 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 8763
95 % 11 15 5682
90 % 11 15 5726
70 % 11 15 5658
50 % 11 15 5447
40 % 204 221 251
30 % 204 221 270
Entity #6 | Chains: F
DNA-directed RNA polymerase II subunit RPB6 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 13 5587
95 % 11 16 4889
90 % 11 16 4947
70 % 11 16 4904
50 % 11 16 4767
40 % 11 16 4657
30 % 11 16 4520
Entity #7 | Chains: G
DNA-directed RNA polymerase II subunit RPB7 protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 16 3471
95 % 12 16 4142
90 % 12 16 4200
70 % 12 16 4179
50 % 97 110 525
40 % 97 110 559
30 % 97 110 584
Entity #8 | Chains: H
DNA-directed RNA polymerase II subunit RPB8 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 16 4292
95 % 11 16 4871
90 % 11 16 4930
70 % 11 16 4882
50 % 11 16 4749
40 % 11 16 4639
30 % 201 220 280
Entity #9 | Chains: I
DNA-directed RNA polymerase II subunit RPB9 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 13 5468
95 % 11 15 5483
90 % 11 15 5519
70 % 11 15 5456
50 % 11 15 5251
40 % 11 15 5117
30 % 11 15 4904

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures