5IMQ

Structure of ribosome bound to cofactor at 3.8 angstrom resolution


Sequence Similarity Clusters for the Entities in PDB 5IMQ

Entity #1 | Chains: 1
50S ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 139 147 110
95 % 139 147 142
90 % 139 147 149
70 % 200 209 132
50 % 327 395 79
40 % 327 395 95
30 % 327 395 94
Entity #10 | Chains: G
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 277 49
95 % 269 277 72
90 % 269 277 77
70 % 269 277 85
50 % 320 357 86
40 % 320 357 102
30 % 320 357 103
Entity #11 | Chains: H
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 319 326 36
95 % 322 334 46
90 % 322 334 51
70 % 322 334 60
50 % 454 515 31
40 % 481 544 30
30 % 481 544 35
Entity #12 | Chains: I
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 322 333 32
95 % 322 333 50
90 % 322 333 54
70 % 322 333 63
50 % 469 534 27
40 % 469 534 36
30 % 469 534 40
Entity #13 | Chains: J
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 324 338 25
95 % 330 344 38
90 % 330 344 43
70 % 330 344 52
50 % 330 344 89
40 % 330 344 104
30 % 354 371 97
Entity #14 | Chains: K
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 323 337 26
95 % 323 338 45
90 % 323 338 50
70 % 323 336 59
50 % 436 471 54
40 % 441 477 66
30 % 441 477 69
Entity #15 | Chains: L
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 319 333 28
95 % 319 333 49
90 % 323 337 49
70 % 323 337 57
50 % 478 543 22
40 % 483 549 28
30 % 629 739 23
Entity #16 | Chains: M
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 227 232 60
95 % 321 333 51
90 % 321 333 55
70 % 321 333 64
50 % 464 527 30
40 % 464 527 38
30 % 464 527 42
Entity #17 | Chains: N
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 320 331 34
95 % 321 332 54
90 % 321 332 58
70 % 321 332 67
50 % 477 538 24
40 % 477 538 32
30 % 500 571 31
Entity #18 | Chains: O
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 321 333 31
95 % 321 333 52
90 % 321 333 56
70 % 321 333 65
50 % 469 533 28
40 % 469 533 37
30 % 469 533 41
Entity #19 | Chains: P
30S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 225 244 55
95 % 321 340 44
90 % 321 340 48
70 % 463 537 15
50 % 479 554 20
40 % 479 554 27
30 % 479 554 33
Entity #2 | Chains: 2
50S ribosomal protein L10 protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 18 2050
95 % 17 18 2626
90 % 17 18 2687
70 % 17 18 2715
50 % 17 18 2729
40 % 17 18 2748
30 % 50 75 809
Entity #20 | Chains: Q
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 321 334 29
95 % 321 334 48
90 % 321 334 53
70 % 321 334 62
50 % 473 538 26
40 % 476 541 33
30 % 476 541 37
Entity #21 | Chains: R
30S ribosomal protein S14 type Z protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 321 332 33
95 % 321 332 55
90 % 321 332 59
70 % 328 339 56
50 % 340 352 87
40 % 340 352 103
30 % 340 352 105
Entity #22 | Chains: S
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 321 336 27
95 % 326 341 43
90 % 326 341 46
70 % 326 341 55
50 % 482 550 21
40 % 482 550 29
30 % 482 550 34
Entity #23 | Chains: T
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 321 328 35
95 % 321 333 53
90 % 321 333 57
70 % 321 333 66
50 % 321 333 92
40 % 321 333 107
30 % 321 333 109
Entity #24 | Chains: U
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 101 308
95 % 315 326 57
90 % 319 330 61
70 % 319 330 69
50 % 319 330 94
40 % 319 330 110
30 % 319 330 112
Entity #25 | Chains: V
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 54 857
95 % 269 277 71
90 % 269 277 76
70 % 269 277 84
50 % 269 277 109
40 % 269 277 128
30 % 269 277 138
Entity #26 | Chains: W
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 281 291 45
95 % 281 291 64
90 % 281 291 71
70 % 323 336 58
50 % 476 540 23
40 % 476 540 31
30 % 476 540 36
Entity #27 | Chains: X
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 270 276 48
95 % 321 332 56
90 % 321 332 60
70 % 321 332 68
50 % 321 332 93
40 % 321 332 108
30 % 321 332 110
Entity #28 | Chains: Y
30S ribosomal protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 281 290 46
95 % 281 290 66
90 % 281 290 73
70 % 281 290 82
50 % 281 290 104
40 % 281 290 124
30 % 281 290 131
Entity #29 | Chains: Z
50S ribosomal protein L1 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 34 1022
95 % 90 101 288
90 % 90 101 302
70 % 90 101 350
50 % 111 164 277
40 % 111 164 288
30 % 111 164 313
Entity #3 | Chains: 3
50S ribosomal protein L11 protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 41 675
95 % 33 44 829
90 % 33 44 867
70 % 54 65 634
50 % 170 264 153
40 % 170 264 168
30 % 172 272 167
Entity #30 | Chains: a
50S ribosomal protein L2 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 194 200 67
95 % 194 200 97
90 % 194 200 99
70 % 218 224 93
50 % 392 461 48
40 % 392 461 57
30 % 392 461 59
Entity #31 | Chains: b
50S ribosomal protein L3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 193 199 65
95 % 193 199 92
90 % 193 199 97
70 % 193 199 108
50 % 396 467 47
40 % 400 471 54
30 % 400 472 56
Entity #32 | Chains: c
50S ribosomal protein L4 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 184 85
95 % 194 200 94
90 % 194 200 100
70 % 194 200 110
50 % 223 229 118
40 % 233 239 134
30 % 383 453 67
Entity #33 | Chains: d
50S ribosomal protein L5 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 185 81
95 % 196 202 82
90 % 196 202 87
70 % 220 226 91
50 % 384 456 50
40 % 384 456 59
30 % 384 456 61
Entity #34 | Chains: e
50S ribosomal protein L6 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 193 199 63
95 % 193 199 89
90 % 193 199 95
70 % 193 199 106
50 % 225 231 115
40 % 387 462 55
30 % 387 462 57
Entity #35 | Chains: f
50S ribosomal protein L13 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 189 195 73
95 % 190 196 101
90 % 190 196 107
70 % 190 196 118
50 % 195 201 128
40 % 363 434 70
30 % 363 434 75
Entity #36 | Chains: g
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 25 1218
95 % 193 199 95
90 % 193 199 101
70 % 260 273 80
50 % 397 474 44
40 % 397 474 49
30 % 397 474 52
Entity #37 | Chains: h
50S ribosomal protein L15 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 193 199 69
95 % 193 199 96
90 % 193 199 104
70 % 193 199 111
50 % 231 240 113
40 % 385 456 60
30 % 385 456 62
Entity #38 | Chains: i
50S ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 183 88
95 % 193 200 87
90 % 193 200 93
70 % 220 227 92
50 % 389 459 49
40 % 389 459 58
30 % 389 459 60
Entity #39 | Chains: j
50S ribosomal protein L17 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 198 204 54
95 % 198 204 79
90 % 198 204 84
70 % 198 204 97
50 % 353 420 58
40 % 388 458 53
30 % 388 460 55
Entity #4 | Chains: 4
P- site tRNA rna, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #40 | Chains: k
50S ribosomal protein L18 protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 184 83
95 % 179 184 111
90 % 179 184 118
70 % 179 184 127
50 % 372 441 57
40 % 372 441 72
30 % 372 441 77
Entity #41 | Chains: l
50S ribosomal protein L19 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 180 89
95 % 193 197 100
90 % 193 197 106
70 % 185 189 125
50 % 185 189 146
40 % 185 189 161
30 % 185 189 162
Entity #42 | Chains: m
50S ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 188 194 75
95 % 193 199 98
90 % 193 199 103
70 % 193 199 113
50 % 390 461 46
40 % 397 469 51
30 % 397 469 53
Entity #43 | Chains: n
50S ribosomal protein L21 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 193 199 62
95 % 193 199 90
90 % 193 199 96
70 % 193 199 107
50 % 249 258 105
40 % 389 456 61
30 % 389 456 63
Entity #44 | Chains: o
50S ribosomal protein L22 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 199 207 58
95 % 200 208 80
90 % 200 208 85
70 % 200 208 98
50 % 358 430 59
40 % 358 430 73
30 % 358 430 78
Entity #45 | Chains: p
50S ribosomal protein L23 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 193 200 61
95 % 193 200 88
90 % 193 200 94
70 % 193 200 105
50 % 219 226 120
40 % 387 462 56
30 % 387 462 58
Entity #46 | Chains: q
50S ribosomal protein L24 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 193 199 64
95 % 193 199 91
90 % 193 199 102
70 % 193 199 112
50 % 361 434 56
40 % 361 434 71
30 % 361 436 76
Entity #47 | Chains: r
50S ribosomal protein L25 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 193 199 72
95 % 194 200 86
90 % 194 200 92
70 % 194 200 104
50 % 194 200 132
40 % 194 200 150
30 % 206 212 150
Entity #48 | Chains: s
50S ribosomal protein L27 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 181 87
95 % 194 200 83
90 % 194 200 88
70 % 194 200 101
50 % 386 454 51
40 % 386 454 62
30 % 386 454 64
Entity #49 | Chains: t
50S ribosomal protein L29 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 11979
95 % 187 192 106
90 % 187 192 114
70 % 187 192 123
50 % 187 192 143
40 % 317 388 87
30 % 343 414 83
Entity #5 | Chains: 5
E site tRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #50 | Chains: u
50S ribosomal protein L30 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 198 206 57
95 % 198 206 81
90 % 198 206 86
70 % 198 206 99
50 % 198 206 127
40 % 379 451 65
30 % 379 451 68
Entity #51 | Chains: v
50S ribosomal protein L31 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 182 92
95 % 177 182 116
90 % 177 182 125
70 % 177 182 134
50 % 192 198 148
40 % 248 275 126
30 % 249 276 136
Entity #52 | Chains: w
50S ribosomal protein L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 183 86
95 % 188 194 103
90 % 188 194 111
70 % 188 194 120
50 % 222 228 121
40 % 222 228 140
30 % 380 448 72
Entity #53 | Chains: x
50S ribosomal protein L33 protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 179 90
95 % 174 180 115
90 % 174 180 124
70 % 174 180 131
50 % 197 204 144
40 % 349 417 79
30 % 349 417 86
Entity #54 | Chains: y
50S ribosomal protein L34 protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 193 199 66
95 % 193 199 93
90 % 193 199 98
70 % 193 199 109
50 % 389 455 52
40 % 389 455 63
30 % 389 455 65
Entity #55 | Chains: z
50S ribosomal protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 194 200 70
95 % 194 200 99
90 % 194 200 105
70 % 194 200 114
50 % 222 228 119
40 % 380 444 67
30 % 380 444 71
Entity #56 | Chains: B
Elongation factor 4 protein, length: 610 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 46720
95 % 1 2 36244
90 % 1 2 34611
70 % 1 2 30890
50 % 6 10 5113
40 % 6 10 4989
30 % 6 10 4792
Entity #6 | Chains: A
16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: D
23S ribosomal RNA rna, length: 2893 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #8 | Chains: E
5S ribosomal RNA rna, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: F
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 320 332 30
95 % 321 334 47
90 % 321 334 52
70 % 321 334 61
50 % 468 530 29
40 % 473 536 34
30 % 473 536 38

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures