Sequence Similarity Clusters for the Entities in PDB 5IG7

Entity #1 | Chains: A,D,G,J
1E01 Fab fragment heavy chain protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 6273
95 % 2 3 7413 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 70 344 16
70 % 596 3001 1
50 % 1239 6273 1
40 % 1239 6273 1
30 % 1251 6319 1
Entity #2 | Chains: B,E,H,K
1E01 Fab fragment light chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 6202
95 % 2 3 6632 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.8
PDBFlex
90 % 5 7 4212
70 % 110 635 7
50 % 1240 6273 1
40 % 1240 6273 1
30 % 1252 6319 1
Entity #3 | Chains: C,F,I,L
peptide PRO-LEU-GLN-PRO-GLN-GLN-PRO-PHE-PRO protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures