Sequence Similarity Clusters for the Entities in PDB 5I8C

Entity #1 | Chains: A
VRC34.01 Fab heavy chain protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 5337
95 % 1 5 6152 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 1 5 6184
70 % 44 2943 1
50 % 51 3094 1
40 % 51 3094 1
30 % 97 6183 1
Entity #2 | Chains: B
VRC34.01 Fab light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 5502
95 % 1 5 6151 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 10 784 2
70 % 35 2399 2
50 % 44 3045 2
40 % 44 3045 2
30 % 98 6183 1
Entity #3 | Chains: C
HIV-1 Clade A BG505 Fusion Peptide (residue 512-520) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5I8C 2 B VRC34.01 Fab light chain 9606
2 6ME1 2 B, D VRC34.01 Fab light chain 9606
3 5I8E 2 B, D VRC34.01 Fab light chain 9606
4 5I8H 5 F, H VRC34.01 Fab light chain 9606
5 6NC3 4 L, T, U, V, W, X Monoclonal antibody VRC34.01 fragment antigen binding light chain 9606