Sequence Similarity Clusters for the Entities in PDB 5I8C

Entity #1 | Chains: A
VRC34.01 Fab heavy chain protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 5294
95 % 1 5 6107 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 1 5 6140
70 % 44 2908 1
50 % 50 3053 1
40 % 50 3053 1
30 % 96 6105 1
Entity #2 | Chains: B
VRC34.01 Fab light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 5438
95 % 1 5 6113 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 10 774 2
70 % 35 2373 2
50 % 44 3008 2
40 % 44 3008 2
30 % 97 6105 1
Entity #3 | Chains: C
HIV-1 Clade A BG505 Fusion Peptide (residue 512-520) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures