Sequence Similarity Clusters for the Entities in PDB 5I42

Entity #1 | Chains: A,C
HIV-1 REVERSE TRANSCRIPTASE P66 SUBUNIT protein, length: 555 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 25 29 1311
95 % 259 292 110 Flexibility: Medium
Max RMSD: 23.5, Avg RMSD: 3.7
PDBFlex
90 % 259 292 116
70 % 259 292 127
50 % 260 293 149
40 % 261 294 162
30 % 261 294 166
Entity #2 | Chains: B,D
HIV-1 REVERSE TRANSCRIPTASE P51 SUBUNIT protein, length: 444 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 116 131 203
95 % 254 286 115 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.5
PDBFlex
90 % 254 286 120
70 % 254 286 132
50 % 255 287 156
40 % 256 288 169
30 % 256 288 174
Entity #3 | Chains: E,F
DNA (38-MER) dna, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures