Sequence Similarity Clusters for the Entities in PDB 5I1J

Entity #1 | Chains: L
FAB LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 14368
95 % 47 111 228 Flexibility: Low
Max RMSD: 6.2, Avg RMSD: 1.8
PDBFlex
90 % 315 774 2
70 % 1020 2373 2
50 % 1285 3008 2
40 % 1285 3008 2
30 % 2621 6105 1
Entity #2 | Chains: H
FAB HEAVY CHAIN protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 19040
95 % 8 9 6318 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.3
PDBFlex
90 % 24 38 1262
70 % 1249 2908 1
50 % 1321 3053 1
40 % 1321 3053 1
30 % 2622 6105 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures