Sequence Similarity Clusters for the Entities in PDB 5HPK

Entity #1 | Chains: A
E3 ubiquitin-protein ligase NEDD4-like protein, length: 383 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 47950
95 % 2 4 14196 Flexibility: Medium
Max RMSD: 6.7, Avg RMSD: 3.5
PDBFlex
90 % 2 4 14476
70 % 4 10 6101
50 % 9 18 3024
40 % 10 21 2575
30 % 11 22 2314
Entity #2 | Chains: B
Ubiquitin variant NL.1 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 76983
95 % 1 1 56334
90 % 1 1 53134
70 % 276 555 9
50 % 278 570 10
40 % 278 574 12
30 % 287 591 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures