Sequence Similarity Clusters for the Entities in PDB 5HMX

Entity #1 | Chains: A
RNA-directed RNA polymerase NS5 protein, length: 635 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 15 4371
95 % 14 19 3910 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 14 19 3975
70 % 15 20 3853
50 % 17 29 1655
40 % 17 29 1719
30 % 17 29 1753

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4HHJ 1 A Non-structural protein 5 RNA-dependent RNA polymerase, UNP residues 2762-3390 12637 2.7.7.48 | Details
2 5WZ3 1 A NS5 RdRp UNP RESIDUES 2795-3407 64320
3 5I3Q 1 A Genome polyprotein RNA-DEPENDENT RNA POLYMERASE, UNP RESIDUES 2762-3390 12637
4 5U04 1 A Zika Virus NS5 RdRp 64320
5 2J7U 1 A RNA DEPENDENT RNA POLYMERASE RNA DEPENDENT RNA POLYMERASE DOMAIN, RESIDUES 2763-3390 12637
6 5HMZ 1 A RNA-directed RNA polymerase NS5 UNP RESIDUES 2762-3390 12637 2.7.7.48 | Details
7 5K5M 1 A RNA Dependent RNA Polymerase UNP Residues 2757-3391 12637
8 5F3Z 1 A Genome polyprotein UNP residues 2762-3390 12637
9 5F41 1 A Genome polyprotein UNP residues 2762-3390 12637
10 5HN0 1 A RNA-directed RNA polymerase NS5 UNP RESIDUES 2762-3390 12637 2.7.7.48 | Details
11 5F3T 1 A RNA-DEPENDENT RNA POLYMERASE 12637
12 3VWS 1 A Non-structural protein 5 RNA-dependent RNA polymerase, UNP residues 2762-3390 12637 2.7.7.48 | Details
13 5HMY 1 A RNA-directed RNA polymerase NS5 UNP RESIDUES 2762-3390 12637 2.7.7.48 | Details
14 5HMW 1 A RNA-directed RNA polymerase NS5 UNP RESIDUES 2762-3390 12637 2.7.7.48 | Details
15 6H80 1 A Genome polyprotein 12637 2.1.1.56 | Details 2.1.1.57 | Details 2.7.7.48 | Details 3.4.21.91 | Details 3.6.1.15 | Details 3.6.4.13 | Details
16 5I3P 1 A Genome polyprotein RNA-DEPENDENT RNA POLYMERASE, UNP RESIDUES 2762-3390 12637
17 5HMX 1 A RNA-directed RNA polymerase NS5 UNP RESIDUES 2762-3390 12637 2.7.7.48 | Details
18 6H9R 1 A Genome polyprotein 12637 2.1.1.56 | Details 2.1.1.57 | Details 2.7.7.48 | Details 3.4.21.91 | Details 3.6.1.15 | Details 3.6.4.13 | Details
19 2HCN 1 A RNA-directed RNA polymerase (NS5) RNA-directed RNA polymerase domain 11082 2.7.7.48 | Details
20 4HDH 1 A, B Polyprotein RNA dependent RNA polymerase module, Residues 272-905 11072 2.7.7.48 | Details
21 4HDG 1 A, B Polyprotein RNA dependent RNA polymerase module, Residues 272-905 11072 2.7.7.48 | Details
22 2HCS 1 A RNA-directed RNA polymerase (NS5) RNA-directed RNA polymerase domain 11082 2.7.7.48 | Details
23 4C11 1 A DENGUE VIRUS TYPE 3 RNA DEPENDENT RNA POLYMERASE POLYMERASE DOMAIN, RESIDUES 2753-3390 12637
24 4C11 2 B DENGUE VIRUS TYPE 3 RNA DEPENDENT RNA POLYMERASE POLYMERASE DOMAIN, RESIDUES 2753-3390 12637
25 2J7W 1 A POLYPROTEIN RNA DEPENDENT RNA POLYMERASE DOMAIN, RESIDUES 2763-3390 12637
26 5IQ6 1 A RNA dependent RNA polymerase 12637
27 5U0C 1 A, B, C, D, E, F, G, H NS5 RNA polymerase domain residues 2781-3419 64320 2.1.1.56 | Details 2.1.1.57 | Details 2.7.7.48 | Details
28 2HFZ 1 A RNA-directed RNA polymerase(NS5) RNA-directed RNA polymerase domain 11082 2.7.7.48 | Details
29 4MTP 1 A, B, C, D RNA dependent RNA polymerase RdRp module of NS5 (UNP Residues 2799-3422) 11072 2.7.7.48 | Details