Sequence Similarity Clusters for the Entities in PDB 5HMX

Entity #1 | Chains: A
RNA-directed RNA polymerase NS5 protein, length: 635 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 15 4396
95 % 14 19 3920 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 14 19 3977
70 % 15 20 3868
50 % 17 29 1666
40 % 17 29 1725
30 % 17 29 1752

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4HHJ 1 A Non-structural protein 5 RNA-dependent RNA polymerase, UNP residues 2762-3390 12637 2.7.7.48 | Details
2 5I3Q 1 A Genome polyprotein RNA-DEPENDENT RNA POLYMERASE, UNP RESIDUES 2762-3390 12637
3 5HMZ 1 A RNA-directed RNA polymerase NS5 UNP RESIDUES 2762-3390 12637 2.7.7.48 | Details
4 5F3Z 1 A Genome polyprotein UNP residues 2762-3390 12637
5 5F41 1 A Genome polyprotein UNP residues 2762-3390 12637
6 5HN0 1 A RNA-directed RNA polymerase NS5 UNP RESIDUES 2762-3390 12637 2.7.7.48 | Details
7 5F3T 1 A RNA-DEPENDENT RNA POLYMERASE 12637
8 3VWS 1 A Non-structural protein 5 RNA-dependent RNA polymerase, UNP residues 2762-3390 12637 2.7.7.48 | Details
9 5HMY 1 A RNA-directed RNA polymerase NS5 UNP RESIDUES 2762-3390 12637 2.7.7.48 | Details
10 5HMW 1 A RNA-directed RNA polymerase NS5 UNP RESIDUES 2762-3390 12637 2.7.7.48 | Details
11 6H80 1 A Genome polyprotein 12637 2.1.1.56 | Details 2.1.1.57 | Details 2.7.7.48 | Details 3.4.21.91 | Details 3.6.1.15 | Details 3.6.4.13 | Details
12 5I3P 1 A Genome polyprotein RNA-DEPENDENT RNA POLYMERASE, UNP RESIDUES 2762-3390 12637
13 5HMX 1 A RNA-directed RNA polymerase NS5 UNP RESIDUES 2762-3390 12637 2.7.7.48 | Details
14 6H9R 1 A Genome polyprotein 12637 2.1.1.56 | Details 2.1.1.57 | Details 2.7.7.48 | Details 3.4.21.91 | Details 3.6.1.15 | Details 3.6.4.13 | Details
15 5IQ6 1 A RNA dependent RNA polymerase 12637