Sequence Similarity Clusters for the Entities in PDB 5HKY

Entity #1 | Chains: A
E3 ubiquitin-protein ligase CBL protein, length: 308 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 16 2390
95 % 3 16 3033 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.0
PDBFlex
90 % 3 16 3116
70 % 3 18 2552
50 % 3 18 2568
40 % 5 24 1972
30 % 5 24 2015
Entity #2 | Chains: B
Protein sprouty homolog 2 protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 50863
95 % 1 2 34013 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 2 32578
70 % 1 2 29178
50 % 1 2 25567
40 % 1 2 23327
30 % 1 2 20792

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures