Sequence Similarity Clusters for the Entities in PDB 5HBT

Entity #1 | Chains: B
Acetylcholine receptor subunit alpha 1 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 71954
95 % 2 3 27262 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.6
PDBFlex
90 % 2 3 26320
70 % 2 3 23964
50 % 2 4 9405
40 % 5 8 5239
30 % 14 24 661
Entity #2 | Chains: C
Fab35, Light Chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 47600
95 % 1 2 36566 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 3 19033
70 % 1281 2251 2
50 % 1605 2846 2
40 % 1605 2846 2
30 % 3266 5773 1
Entity #3 | Chains: D
Fab35, Heavy Chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 54883
95 % 1 2 37453 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 2 35745
70 % 1558 2750 1
50 % 1641 2885 1
40 % 1641 2885 1
30 % 3267 5773 1
Entity #4 | Chains: A
Alpha-bungarotoxin isoform V31 protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6780
95 % 4 26 2093 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 4 27 1981
70 % 4 27 2040
50 % 8 38 1310
40 % 8 38 1356
30 % 8 38 1391

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures