Sequence Similarity Clusters for the Entities in PDB 5H2J

Entity #1 | Chains: A
Bacteriorhodopsin protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 80 472
95 % 65 149 249 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 65 149 259
70 % 66 150 300
50 % 70 164 296
40 % 70 164 309
30 % 70 164 328

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures