Sequence Similarity Clusters for the Entities in PDB 5H0N

Entity #1 | Chains: A,C,E,G,I,K
HIV-1 gp41 NHR protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 3933
95 % 3 4 4712
90 % 3 4 4775
70 % 3 4 4732
50 % 3 4 4595
40 % 3 4 4499
30 % 3 4 4377
Entity #2 | Chains: B,D,F,H,J,L
HIV-1 fusion inhibitor MT-WQ-IDL protein, length: 31 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 16443
95 % 1 1 14675
90 % 1 1 14431
70 % 2 2 11529
50 % 2 2 10526
40 % 2 2 9919
30 % 2 2 9189

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures