5GSR

Mouse MHC class I H-2Kd with a MERS-CoV-derived peptide I5A


Sequence Similarity Clusters for the Entities in PDB 5GSR

Entity #1 | Chains: B,D
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 429 751 2
95 % 461 800 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 469 818 3
70 % 569 1123 4
50 % 580 1149 4
40 % 580 1149 5
30 % 580 1149 10
Entity #2 | Chains: A,C
H-2 class I histocompatibility antigen, K-D alpha chain protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 18861
95 % 7 13 3174 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 7 13 3260
70 % 457 842 6
50 % 462 856 8
40 % 501 917 9
30 % 502 942 13
Entity #3 | Chains: P,Q
9-mer peptide from Spike protein protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures