Sequence Similarity Clusters for the Entities in PDB 5GSB

Entity #1 | Chains: A
H-2 class I histocompatibility antigen, K-D alpha chain protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 3554
95 % 1 13 3255 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 1 13 3332
70 % 208 842 6
50 % 209 856 7
40 % 219 917 8
30 % 219 942 14
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 204 751 2
95 % 227 799 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 230 818 3
70 % 255 1123 4
50 % 260 1149 3
40 % 260 1149 4
30 % 260 1149 10
Entity #3 | Chains: C
MERS-CoV peptide 37-3 protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures