Sequence Similarity Clusters for the Entities in PDB 5GJS

Entity #1 | Chains: A
Hemagglutinin protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 2235
95 % 16 19 661 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 0.8
PDBFlex
90 % 16 20 671
70 % 54 70 247
50 % 158 184 88
40 % 328 379 15
30 % 328 379 22
Entity #2 | Chains: B
Hemagglutinin protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 1702
95 % 16 19 649 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 0.9
PDBFlex
90 % 49 61 246
70 % 161 185 51
50 % 320 365 13
40 % 320 365 19
30 % 325 376 24
Entity #3 | Chains: L
light chain of human neutralizing antibody 3E1 protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40698
95 % 169 210 78 Flexibility: Low
Max RMSD: 7.7, Avg RMSD: 2.3
PDBFlex
90 % 422 530 4
70 % 1928 2368 2
50 % 2407 3003 2
40 % 2407 3003 2
30 % 4879 6095 1
Entity #4 | Chains: H
heavy chain of human neutralizing antibody 3E1 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 44221
95 % 2 2 34734 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 35 43 621
70 % 2326 2903 1
50 % 2439 3048 1
40 % 2439 3048 1
30 % 4880 6095 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures