Sequence Similarity Clusters for the Entities in PDB 5GAR

Entity #1 | Chains: A,B,C
V-type ATP synthase alpha chain protein, length: 577 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 16 873
95 % 15 17 1116
90 % 15 17 1159
70 % 15 17 1198
50 % 58 63 387
40 % 58 63 416
30 % 58 63 428
Entity #2 | Chains: D,E,F
V-type ATP synthase beta chain protein, length: 457 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 16 877
95 % 15 17 1127
90 % 15 17 1162
70 % 15 17 1202
50 % 33 35 602
40 % 33 35 645
30 % 33 35 667
Entity #3 | Chains: G,H
V-type ATP synthase subunit E protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 9 3707
95 % 13 15 2390
90 % 13 15 2439
70 % 13 15 2503
50 % 13 15 2534
40 % 13 15 2553
30 % 13 15 2536
Entity #4 | Chains: I,J
V-type ATPase subunit G protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 7 5254
95 % 5 7 6160
90 % 5 7 6194
70 % 5 7 6113
50 % 5 7 5843
40 % 5 7 5683
30 % 5 7 5423
Entity #5 | Chains: K
V-type ATP synthase subunit D protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 16 3521
95 % 14 16 4177
90 % 14 16 4229
70 % 14 16 4208
50 % 14 16 4115
40 % 14 16 4060
30 % 14 16 3968
Entity #6 | Chains: L
V-type ATP synthase subunit F protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 17 2400
95 % 15 17 3031
90 % 15 17 3105
70 % 15 17 3088
50 % 15 17 3081
40 % 15 17 3075
30 % 15 17 3054
Entity #7 | Chains: M
V-type ATP synthase subunit C protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 15 4033
95 % 13 15 4715
90 % 13 15 4776
70 % 13 15 4727
50 % 13 15 4597
40 % 13 15 4499
30 % 13 15 4364
Entity #8 | Chains: N
Archaeal/vacuolar-type H+-ATPase subunit I protein, length: 652 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 33480
95 % 10 11 8131
90 % 10 11 8069
70 % 10 11 7854
50 % 10 11 7387
40 % 10 11 7116
30 % 10 11 6761
Entity #9 | Chains: O,P,Q,R,S,T,U,V,W,X,Y,Z
Vacuolar type ATP synthase subunit protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 10 338
95 % 9 10 451
90 % 9 10 479
70 % 9 10 509
50 % 9 10 534
40 % 9 10 575
30 % 9 10 591

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures