Sequence Similarity Clusters for the Entities in PDB 5FOB

Entity #1 | Chains: A
COMPLEMENT C3 BETA CHAIN protein, length: 645 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 19 1514
95 % 4 27 1448 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.1
PDBFlex
90 % 4 27 1484
70 % 4 27 1511
50 % 4 27 1533
40 % 5 30 1454
30 % 5 30 1483
Entity #2 | Chains: B
COMPLEMENT C3B ALPHA' CHAIN protein, length: 915 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 5055
95 % 2 20 2127 Flexibility: Medium
Max RMSD: 31.2, Avg RMSD: 7.2
PDBFlex
90 % 2 20 2177
70 % 2 20 2227
50 % 2 20 2279
40 % 2 20 2301
30 % 2 20 2312
Entity #3 | Chains: C
SMALLPOX INHIBITOR OF COMPLEMENT SPICE, D15L protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67024
95 % 1 1 53331
90 % 1 1 50460
70 % 1 1 44131
50 % 1 1 38077
40 % 1 1 34473
30 % 1 1 30441

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures