Sequence Similarity Clusters for the Entities in PDB 5FMF

Entity #1 | Chains: 1
DNA REPAIR HELICASE RAD25, SSL2 protein, length: 492 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60526
95 % 1 1 51596
90 % 1 1 48774
70 % 1 1 42718
50 % 1 1 36964
40 % 1 1 33392
30 % 1 1 29490
Entity #10 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3, RPB8 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 184 185
95 % 174 185 239
90 % 174 185 247
70 % 174 185 288
50 % 193 204 297
40 % 193 204 308
30 % 207 220 280
Entity #11 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 126 133 274
95 % 126 133 371
90 % 126 133 387
70 % 145 152 348
50 % 147 154 400
40 % 147 154 423
30 % 159 169 400
Entity #12 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, RPB10 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 184 186
95 % 174 184 242
90 % 174 184 249
70 % 209 220 228
50 % 209 220 242
40 % 209 220 254
30 % 209 220 274
Entity #13 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 127 134 273
95 % 127 134 369
90 % 127 134 382
70 % 127 134 415
50 % 146 153 410
40 % 148 155 421
30 % 148 155 442
Entity #14 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4, RPB12 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 23884
95 % 3 4 23826
90 % 3 4 23123
70 % 3 4 21149
50 % 3 4 18704
40 % 3 4 17192
30 % 3 4 15480
Entity #15 | Chains: M
RNA POLYMERASE II PRE-INITIATION COMPLEX, TOA1 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 83207
95 % 1 1 55783
90 % 1 1 43808
70 % 1 1 38566
50 % 1 1 33418
40 % 1 1 35425
30 % 1 1 26768
Entity #16 | Chains: N
NON-TEMPLATE STRAND DNA dna, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #17 | Chains: O
TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2, TOA2 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 12 6772
95 % 12 12 7531
90 % 12 12 7505
70 % 12 12 7340
50 % 12 12 6936
40 % 12 12 6408
30 % 12 12 6075
Entity #18 | Chains: P
TRANSCRIPTION INITIATION FACTOR IIB, SUA7 protein, length: 345 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 14 4928
95 % 12 14 5797
90 % 12 14 6243
70 % 12 14 6158
50 % 12 14 5531
40 % 12 14 5391
30 % 12 14 5141
Entity #19 | Chains: Q
TATA-BOX-BINDING PROTEIN, TBP protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 5148
95 % 6 9 5885
90 % 6 9 6158
70 % 47 50 852
50 % 47 50 891
40 % 47 50 927
30 % 47 50 974
Entity #2 | Chains: 2
TRANSCRIPTION ELONGATION FACTOR S-II, DST1 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 33049
95 % 5 5 18624
90 % 5 5 18019
70 % 5 5 16763
50 % 6 6 13378
40 % 6 6 12468
30 % 6 6 11434
Entity #20 | Chains: R
TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA, TFA1 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66765
95 % 1 1 53166
90 % 1 1 57910
70 % 1 1 43919
50 % 1 1 37984
40 % 1 1 39158
30 % 1 1 34470
Entity #21 | Chains: S
TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT BETA, TFA2 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66766
95 % 1 1 61456
90 % 1 1 50188
70 % 1 1 43920
50 % 1 1 37985
40 % 1 1 34295
30 % 1 1 30296
Entity #22 | Chains: T
TEMPLATE STRAND DNA dna, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: U
RNA POLYMERASE II PRE-INITIATION COMPLEX, TFG1 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66764
95 % 1 1 53165
90 % 1 1 57909
70 % 1 1 43918
50 % 1 1 37983
40 % 1 1 34293
30 % 1 1 30294
Entity #24 | Chains: V
TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA, TFG2 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66762
95 % 1 1 53163
90 % 1 1 50185
70 % 1 1 43916
50 % 1 1 37981
40 % 1 1 34291
30 % 1 1 30292
Entity #25 | Chains: W
RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 2, TFB2 protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66763
95 % 1 1 53164
90 % 1 1 50186
70 % 1 1 43917
50 % 1 1 37982
40 % 1 1 34292
30 % 1 1 30293
Entity #26 | Chains: X
RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 5, TFB5 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66760
95 % 1 1 53162
90 % 1 1 50184
70 % 1 1 43915
50 % 1 1 37980
40 % 1 1 34290
30 % 1 1 30291
Entity #27 | Chains: Y
DNA REPAIR HELICASE RAD3 protein, length: 778 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 53312
95 % 5 5 17040
90 % 5 5 17890
70 % 5 5 15610
50 % 15 15 5269
40 % 15 15 5134
30 % 15 15 4919
Entity #3 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 127 132 280
95 % 127 132 376
90 % 127 132 391
70 % 146 151 351
50 % 148 153 403
40 % 148 153 427
30 % 148 153 448
Entity #4 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 126 133 276
95 % 127 134 364
90 % 127 134 378
70 % 148 155 341
50 % 162 170 368
40 % 170 178 357
30 % 182 193 350
Entity #5 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 266 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 18213
95 % 3 5 17339
90 % 3 5 17009
70 % 3 5 15893
50 % 3 5 14350
40 % 17 20 3809
30 % 17 20 3729
Entity #6 | Chains: D
RNA POLYMERASE II PRE-INITIATION COMPLEX, RPB4 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 47481
95 % 2 2 43559
90 % 2 2 41410
70 % 2 2 36562
50 % 2 2 31695
40 % 21 21 3419
30 % 21 21 3347
Entity #7 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1, RPB5 protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 185 182
95 % 175 185 240
90 % 175 185 248
70 % 194 204 263
50 % 196 206 288
40 % 210 221 251
30 % 210 221 270
Entity #8 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2, RPB6 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 18076
95 % 3 5 16958
90 % 3 5 16793
70 % 3 5 15672
50 % 3 5 14160
40 % 3 5 13181
30 % 3 5 12020
Entity #9 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 67 73 574
95 % 67 73 780
90 % 67 73 820
70 % 67 73 853
50 % 103 110 525
40 % 103 110 559
30 % 103 110 584

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures