Sequence Similarity Clusters for the Entities in PDB 5F9O

Entity #1 | Chains: G
clade A/E 93TH057 HIV-1 gp120 core protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 29 1314
95 % 10 67 592 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 10 67 621
70 % 15 108 319
50 % 15 108 375
40 % 15 108 398
30 % 15 110 401
Entity #2 | Chains: H
CH235.9 Heavy chain protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64902
95 % 1 1 50226
90 % 1 1 47557
70 % 468 2928 1
50 % 497 3079 1
40 % 497 3079 1
30 % 981 6153 1
Entity #3 | Chains: L
CH235.09 Light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 64903
95 % 2 39 1037 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 1.2
PDBFlex
90 % 1 8 6298
70 % 381 2391 2
50 % 477 3030 2
40 % 477 3030 2
30 % 982 6153 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures