Sequence Similarity Clusters for the Entities in PDB 5F0J

Entity #1 | Chains: A
Vacuolar protein sorting-associated protein 35 protein, length: 462 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 9016
95 % 1 5 9035 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.4
PDBFlex
90 % 1 5 9265
70 % 1 5 9052
50 % 1 5 8445
40 % 1 5 8266
30 % 1 5 7660
Entity #2 | Chains: B
Vacuolar protein sorting-associated protein 26A protein, length: 341 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 18363
95 % 2 6 13128 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 3 7 12038
70 % 3 7 11683
50 % 5 11 5484
40 % 5 11 5346
30 % 5 11 5086
Entity #3 | Chains: C
Sorting nexin-3 protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 18384
95 % 1 5 17125 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 5 16854
70 % 1 5 15764
50 % 1 5 14207
40 % 1 5 13200
30 % 1 5 12013

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures