Sequence Similarity Clusters for the Entities in PDB 5EWM

Entity #1 | Chains: A,C
NMDA glutamate receptor subunit protein, length: 390 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 16966
95 % 8 18 2052 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 8 18 2104
70 % 8 19 1946
50 % 8 19 1963
40 % 8 19 2036
30 % 8 19 2060
Entity #2 | Chains: B,D
Glutamate receptor ionotropic, NMDA 2B protein, length: 364 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 15557
95 % 7 16 2340 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.0
PDBFlex
90 % 7 16 2408
70 % 7 16 2449
50 % 7 19 2205
40 % 7 19 2253
30 % 7 19 2252

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures