Sequence Similarity Clusters for the Entities in PDB 5E6B

Entity #1 | Chains: A,B
Glucocorticoid receptor protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 7612
95 % 5 10 3046 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 6 12 2372
70 % 6 12 2408
50 % 6 12 2434
40 % 6 12 2469
30 % 6 12 2446
Entity #2 | Chains: C
DNA (5'-D(*CP*GP*GP*CP*GP*GP*AP*AP*TP*TP*CP*CP*CP*CP*GP*G)-3') dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: D
DNA (5'-D(*CP*CP*GP*GP*GP*GP*AP*AP*TP*TP*CP*CP*GP*CP*CP*G)-3') dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5E69 1 A, B Glucocorticoid receptor unp residues 391-480 9606
2 4HN5 1 A, B Glucocorticoid receptor Glucocorticoid Receptor DNA Binding Domain 9606
3 5CBY 1 A, B AncGR2 DNA Binding Domain 32644
4 5CBX 1 A, B, E, F AncGR DNA Binding Domain 32644
5 5E6B 1 A, B Glucocorticoid receptor unp residues 391-480 9606
6 5E6C 1 A, B Glucocorticoid receptor unp residues 391-480 9606
7 5E6A 1 A, B Glucocorticoid receptor unp residues 391-480 9606
8 4HN6 1 A, B Glucocorticoid receptor 9606
9 5CC1 1 A, B, W, X Glucocorticoid receptor 9606
10 5E6D 3 A, B Glucocorticoid receptor 9606