Sequence Similarity Clusters for the Entities in PDB 5DYO

Entity #1 | Chains: A,H
Fab 43.1 Heavy Chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50431
95 % 1 1 38543 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 2 27097
70 % 1143 2882 1
50 % 1213 3027 1
40 % 1213 3027 1
30 % 2402 6051 1
Entity #2 | Chains: B,L
Fab 43.1 Light Chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50432
95 % 1 1 38544 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.2
PDBFlex
90 % 33 55 744
70 % 929 2351 2
50 % 1175 2982 2
40 % 1175 2982 2
30 % 2403 6051 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures