Sequence Similarity Clusters for the Entities in PDB 5DKA

Entity #1 | Chains: A,B
E3 ubiquitin-protein ligase RNF125 protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53549
95 % 1 1 33632 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 29175
70 % 1 1 28880
50 % 1 1 25276
40 % 1 1 25240
30 % 1 1 22450

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures