Sequence Similarity Clusters for the Entities in PDB 5DHF

Entity #1 | Chains: A
GTP-binding nuclear protein Ran protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 47 721
95 % 36 74 455 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 6.1
PDBFlex
90 % 36 75 484
70 % 38 78 493
50 % 38 78 521
40 % 38 78 556
30 % 38 78 580
Entity #2 | Chains: B
Ran-specific GTPase-activating protein 1 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 30 1772
95 % 23 42 1586 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 23 42 1608
70 % 23 42 1653
50 % 23 43 1589
40 % 23 43 1650
30 % 23 43 1670
Entity #3 | Chains: C
Exportin-1 protein, length: 1024 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 15 4689
95 % 28 47 1371 Flexibility: Low
Max RMSD: 6.9, Avg RMSD: 0.9
PDBFlex
90 % 28 47 1413
70 % 28 47 1444
50 % 28 58 1084
40 % 28 58 1110
30 % 28 58 1147
Entity #4 | Chains: D
Serine/threonine-protein kinase RIO2 protein, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures