Sequence Similarity Clusters for the Entities in PDB 5D6D

Entity #1 | Chains: A,B
Ig gamma-1 chain C region protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54585
95 % 160 176 114 Flexibility: Low
Max RMSD: 10.4, Avg RMSD: 1.5
PDBFlex
90 % 74 88 248
70 % 174 192 120
50 % 185 203 131
40 % 185 203 148
30 % 188 206 150
Entity #2 | Chains: C
Low affinity immunoglobulin gamma Fc region receptor III-A protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 82262
95 % 1 1 57637
90 % 1 1 54375
70 % 1 1 47390
50 % 1 1 40902
40 % 1 1 36917
30 % 1 1 32511

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures