Sequence Similarity Clusters for the Entities in PDB 5CVD

Entity #1 | Chains: A,B
N-terminal Xaa-Pro-Lys N-methyltransferase 1 protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27483
95 % 1 10 4088 Flexibility: Low
Max RMSD: 4.3, Avg RMSD: 0.7
PDBFlex
90 % 1 10 4110
70 % 1 10 4185
50 % 2 12 3490
40 % 2 12 3506
30 % 2 12 3426
Entity #2 | Chains: D,E
N-teminal peptide from Histone H3-like centromeric protein A protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures