Sequence Similarity Clusters for the Entities in PDB 5CVB

Entity #1 | Chains: A,D
Collagen alpha-1(I) chain,Collagen alpha-1(IX) chain protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 20132
95 % 3 3 18450 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.9
PDBFlex
90 % 4 4 12868
70 % 7 8 6818
50 % 10 12 4174
40 % 10 12 4094
30 % 10 12 3991
Entity #2 | Chains: B,E
Collagen alpha-1(I) chain,Collagen alpha-2(IX) chain protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28186
95 % 2 2 24272 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 4 4 12867
70 % 8 8 6818
50 % 11 12 4174
40 % 11 12 4094
30 % 11 12 3991
Entity #3 | Chains: C,F
Collagen alpha-1(I) chain,Collagen alpha-3(IX) chain protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 16514
95 % 4 4 14703 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 2.4
PDBFlex
90 % 4 4 14496
70 % 4 4 13656
50 % 12 12 4174
40 % 12 12 4094
30 % 12 12 3991

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures