5CVA

Crystal structure of the type IX collagen NC2 hetero-trimerization domain with a guest fragment a1a2a1 of type I collagen


Sequence Similarity Clusters for the Entities in PDB 5CVA

Entity #1 | Chains: A,D
Collagen alpha-2(I) chain,Collagen alpha-1(IX) chain protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61136
95 % 1 1 40844
90 % 3 4 15977
70 % 5 8 7062
50 % 7 12 4660
40 % 7 12 4555
30 % 7 12 4428
Entity #2 | Chains: B,E
Collagen alpha-1(I) chain,Collagen alpha-2(IX) chain protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 30521
95 % 1 2 25416
90 % 3 4 16948
70 % 6 8 7062
50 % 8 12 4660
40 % 8 12 4555
30 % 8 12 4428
Entity #3 | Chains: C,F
Collagen alpha-1(I) chain,Collagen alpha-3(IX) chain protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 18427
95 % 3 4 17251
90 % 3 4 16949
70 % 3 4 15838
50 % 9 12 4660
40 % 9 12 4555
30 % 9 12 4428

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures