Sequence Similarity Clusters for the Entities in PDB 5CTD

Entity #1 | Chains: A
Collagen alpha-1(I) chain,Collagen alpha-1(IX) chain protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 21101
95 % 1 3 19871 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.9
PDBFlex
90 % 1 4 13751
70 % 1 8 6682
50 % 1 12 4217
40 % 1 12 4402
30 % 1 12 4285
Entity #2 | Chains: B
Collagen alpha-2(I) chain,Collagen alpha-2(IX) chain protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 38735
95 % 1 2 32568 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 4 14504
70 % 2 8 6682
50 % 2 12 4217
40 % 2 12 4402
30 % 2 12 4285
Entity #3 | Chains: C
Collagen alpha-1(I) chain,Collagen alpha-3(IX) chain protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 17632
95 % 1 4 13533 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 2.4
PDBFlex
90 % 1 4 13345
70 % 1 4 12655
50 % 3 12 4217
40 % 3 12 4402
30 % 3 12 4285

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures