Sequence Similarity Clusters for the Entities in PDB 5CQJ

Entity #1 | Chains: A,B
Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 26 883
95 % 17 28 1136 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.0
PDBFlex
90 % 17 28 1181
70 % 17 28 1227
50 % 17 28 1267
40 % 22 36 1020
30 % 30 46 848

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures