Sequence Similarity Clusters for the Entities in PDB 5CCM

Entity #1 | Chains: A
Histone-lysine N-methyltransferase SMYD3 protein, length: 428 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 9 8353
95 % 16 23 2774 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 16 23 2975
70 % 16 23 2938
50 % 16 23 2906
40 % 16 23 2934
30 % 29 47 1394

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures