Sequence Similarity Clusters for the Entities in PDB 5CB4

Entity #1 | Chains: A,C
Tubulin alpha protein, length: 450 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 47 166 43
95 % 47 260 13 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.0
PDBFlex
90 % 47 261 15
70 % 47 277 13
50 % 47 277 17
40 % 93 554 3
30 % 93 565 8
Entity #2 | Chains: B,D
Tubulin beta protein, length: 445 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 40 112 171
95 % 46 256 14 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 0.7
PDBFlex
90 % 47 269 8
70 % 47 277 12
50 % 47 277 16
40 % 94 554 3
30 % 94 565 8
Entity #3 | Chains: E
Stathmin-4 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 104 403
95 % 37 118 451 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.9
PDBFlex
90 % 37 118 480
70 % 37 118 511
50 % 37 118 538
40 % 37 118 579
30 % 37 118 595
Entity #4 | Chains: F
Uncharacterized protein protein, length: 384 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 104 404
95 % 35 104 535 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 0.8
PDBFlex
90 % 35 104 558
70 % 35 107 558
50 % 35 107 601
40 % 35 107 638
30 % 35 107 656

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures