Sequence Similarity Clusters for the Entities in PDB 5C9J

Entity #1 | Chains: A
T-cell surface glycoprotein CD1c,T-cell surface glycoprotein CD1b protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60952
95 % 1 1 54078
90 % 1 3 27547
70 % 1 3 23299
50 % 40 138 369
40 % 40 138 386
30 % 41 140 393
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 401 728 2
95 % 432 777 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 440 795 4
70 % 534 1099 4
50 % 544 1123 3
40 % 544 1123 3
30 % 544 1123 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures