Sequence Similarity Clusters for the Entities in PDB 5BVP

Entity #1 | Chains: H
canakinumab Fab heavy-chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 18351
95 % 4 4 11964 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.4
PDBFlex
90 % 99 296 34
70 % 856 2750 1
50 % 908 2885 1
40 % 908 2885 1
30 % 1797 5773 1
Entity #2 | Chains: I
Interleukin-1 beta protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 16 3569
95 % 17 27 2446 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 19 29 2305
70 % 19 28 2422
50 % 20 34 1800
40 % 20 34 1845
30 % 24 43 1387
Entity #3 | Chains: L
Canakinumab Fab light-chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 12420
95 % 4 4 12345 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 4 6 2813
70 % 690 2251 2
50 % 877 2846 2
40 % 877 2846 2
30 % 1798 5773 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures