Sequence Similarity Clusters for the Entities in PDB 5BS0

Entity #1 | Chains: A
HLA class I histocompatibility antigen, A-1 alpha chain protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 3682
95 % 13 23 1463 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 213 335 40
70 % 530 816 6
50 % 531 821 8
40 % 566 865 9
30 % 571 889 12
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 468 702 2
95 % 501 751 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 510 767 3
70 % 664 1070 4
50 % 678 1094 4
40 % 678 1094 4
30 % 678 1094 7
Entity #3 | Chains: C
Titin protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
Protein TRAV21,T-cell receptor alpha chain C region protein, length: 197 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 51054
95 % 1 2 37341 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 19 23 2916
70 % 75 166 174
50 % 140 394 76
40 % 140 394 89
30 % 140 394 90
Entity #5 | Chains: E
Protein TRBV5-1,Human nkt tcr beta chain protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 37317
95 % 2 7 6696 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 7 12 4733
70 % 140 381 43
50 % 143 403 64
40 % 143 403 80
30 % 143 403 85

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures